Support vector machines and kernels for computational biology

Support vector machines and kernels for computational biology asa ben-hur,1,†cheng soon ong,2 3 ‡ s¨oren sonnenburg,4 bernhard sch¨olkopf3 and gunnar...

Support vector machines and kernels for computational biology

Education support vector machines and kernels for computational biology asa ben-hur1., cheng soon ong2,3.¤,so¨ren sonnenburg4, bernhard scho¨lkopf3, gunnar...

Support vector machines, kernels, and applications in ...

Support vector machines, kernels, and applications in computational biology jean-philippe vert jean-philippe.vert{+[**et **]+}mi nes-paristech.fr mines paristech / institut curie...

A review of support vector machines in computational biology

A review of support vector machines in computational biology brett naul june 6, 2009 1 introduction in the biological sciences, arguably moreso than in any other...

1 support vector machine applications in computational biology

Computational biology... that are common in biology. also, kernels provide an easy way to... a tutorial on support vector machines for pattern recognition.

Support vector machines and bioinformatics

Support vector machines (svm) in bioinformatics... conference on computational biology, 249-255. 2001. 18... use polynomial kernels of degree 3. 21

Support vector machines with profile-based kernels for remote ...

Support vector machines with profile-based kernels for... advances in molecular biology like large-scale... support vector machines are based on linear learning...

There has been much recent work on support vector machine ...

Journal of bioinformatics and computational biology... we introduce novel profile-based string kernels for use with support vector machines (svms) for the

Training invariant support vector machines

Of computational biology involving nucleotide... fast training of support vector machines using sequential minimal... prior knowledge in support vector kernels.

Classi cation by support vector machines - bioconductor

Classi cation by support vector machines florian markowetz max-planck-institute for molecular genetics { computational molecular biology {berlin

Learning bounds for support vector machines with learned kernels

Learning bounds for support vector machines with learned kernels nathan srebro toyota technological institute at chicago nati{??at??}uchicago.edu shai ben-david

The shogun machine learning toolbox

Keywords: support vector machines, kernels, large-scale learning, python, octave, r 1... kernels for computational biology. plos computat biol, 4(10):e1000173, 2008.

The "kernel trick"

1/14/2009 1 the "kernel trick" a computational biology example using support vector machines suzi fei january 13, 2009 take-home message everything you...

Support vector machine prediction of signal ...

Probabilistic models for strings play a central role in computational biology... such as support vector machines... kernels should be more deeply investigated and...

Rational kernels: theory and algorithms - journal of machine ...

Learning techniques such as support vector machines (svms)... this result has a direct consequence on the design of kernels in computational biology, often

An introduction to support vector machines

04/21/10 2 outline history of support vector machines (svm) two classes, linearly separable what is a good decision boundary? two classes, not linearly separable

Training invariant support vector machines

Of computational biology... fast training of support vector machines using... the connection between regularization operators and support vector kernels...

Popisk: t-cell reactivity prediction using support vector machines ...

Mit press mit press series on computational molecular biology 2003, 277-298. 54... t-cell reactivity prediction using support vector machines and string kernels

Improved learning of structural support vector machines...

Improved learning of structural support vector machines: training with latent variables and nonlinear kernels a dissertation presented to...

Chapter 1.24 kernel methods in genomics and computational biology

295 kernel methods in genomics and computational biology of proteomics, focusing on the systematic, large-scale analysis of proteins (aebersold & mann...

Rational kernels: theory and algorithms

Widely used in statistical learning techniques such as support vector machines (svms) is... 6.3 other kernels used in computational biology

Profile-based string kernels for remote homology detection and ...

We introduce novel profile-based string kernels for use with support vector machines (svms) for the problems of... hidden markov models in computational biology: ap-

Microarray data classification using support vector machine

Keywords: support vector machines, microarray, classification 1. introduction... and kernels for computational biology.", plos comput biol 4(10), 2008.

Classi cation by support vector machines

Classi cation by support vector machines florian markowetz max-planck-institute for molecular genetics { computational molecular biology {berlin

Support vector machines for additive models: consistency and ...

Arxiv:1007.4062v 1 [stat.ml] 23 jul 2010 support vector machines for additive models: consistency and robustness andreas christmann and robert hable department of...

Mismatch string kernels for discriminative protein classification

Is a central problem in computational biology... mismatch kernels, for use with support vector machines (svms) in a discriminative approach to the problem of pro-

Kernel methods in genomics and computational biology

Ccsd-00012124, version 1 - 17 oct 2005 kernel methods in genomics and computational biology jean-philippe vert october 17, 2005 abstract support vector machines...

Kernel methods -6 applications of kernel methods

Support vector machines;... - learning kernels (kernel matrices) from data (and using them for... international conference on computational molecular biology, 2001

Classifying dna repair genes by kernel-based support vector machines

Support vector machines hao jiang*... kernels is introduced in order to better fit the training data... computational biology [24]...

Bmc bioinformatics biomed

A new pairwise kernel for biological network inference with support vector machines... 1centre for computational biology, ecole des... kernels performs...

Ism trecvid2008 high-level feature extraction

2centre for computational biology... we investigate the use of graph kernels in combination with support vector... analysis with support vector machines. j...

Support vector machines for protein fold class prediction

Florian markowetz et al.: support vector machines for protein fold class prediction 1 support vector machines for protein fold class prediction


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